If CONNECT needs to connect permutational isomers of the same minimum in the course of a run then the initial guess for the transition state geometry is generated using the NEB routine with just two images, to avoid cold fusion problems.
CONNECT generally needs to be augmented by other keywords to specify how the transition state geometries should be guessed (NEB, NEWNEB or FIXD), how the transition state searches should be performed (SEARCH 2 or BFGSTS, with or without NOHESS, NOIT etc.), and how that pathways should be calculated (SEARCH 0, 6 or 7, BFGSMIN, RKMIN or BSMIN). Most of these combinations should work together. A summary file will be produced if DUMPPATH is specified. An xyz file for the overall path will be printed to path.xyz and the energy as a function of path length is printed to EofS. The corresponding xyz and energy files for the individual steps in the path are numbered path.n.xyz and EofS.n for transition state n.
When NEB is used in a CONNECT run its function is merely to produce a starting guess for the transition state geometry, from which a transition state search of some kind is then initiated. It seems that the higher energy parts of a path converge faster than the lower regions in NEB calculations, and so it is possible to generate a transition state guess using only a few images and sloppy convergence in the NEB part of the calculation.
In the latest OPTIM the NEB and CONNECT keywords are augmented by new algorithms, which are selected using NEWNEB and NEWCONNECT. NEWNEB can work on its own and with both CONNECT and NEWCONNECT. However, NEWCONNECT cannot be used with the old NEB. The new algorithms are based on the doubly-nudged elastic band approach and a more sophisticated connection algorithm. Example input and output for the LJ38 cluster are available at http://www-wales.ch.cam.ac.uk/examples/OPTIM/. NEWNEB and NEWCONNECT should always be used in new applications in preference to the old keywords. Example input and output for the LJ38 cluster are available at http://www-wales.ch.cam.ac.uk/examples/OPTIM/.